Package: smotif
Type: Package
Title: Spatial Multi-Cellular Motifs
Version: 0.2.0
Authors@R: person("Ruben", "Dries", email = "rdries@bu.edu",
    role = c("aut", "cre"))
Description: Discovery and statistical evaluation of recurrent
        multi-cellular motifs (size 2, 3, and 4) in spatial omics data.
        Provides a lightweight 'SpatialGraph' representation backed by
        parquet, enumeration over igraph, spatially-aware null models,
        motif-to-gene association, and cross-region or cross-sample
        comparison. Designed to be framework-agnostic so that the core
        can be folded into Giotto Suite later.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.2)
Imports: arrow, data.table, igraph, Matrix
Suggests: FNN, Giotto, smotifrs (>= 0.2.0), GiottoClass, GiottoVisuals,
        dbscan, deldir, ggplot2, gridExtra, httr2, jsonlite, knitr,
        motifr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake libglpk-dev libxml2-dev libssl-dev
Repository: https://drieslab.r-universe.dev
Date/Publication: 2026-10-15 21:20:48 UTC
RemoteUrl: https://github.com/drieslab/smotif
RemoteRef: HEAD
RemoteSha: 5cae17932f26332bb84a598cd0360b8ebecbfd1f
NeedsCompilation: no
Packaged: 2026-10-15 23:15:14 UTC; root
Author: Ruben Dries [aut, cre]
Maintainer: Ruben Dries <rdries@bu.edu>